{"data":{"id":37,"name":"MDDMM","abbreviation":"MDDMM","description":"<h2>Dynamic Mechanistic Model with MD-Derived Kinetic Rate Constants<\/h2>\r\n\r\n<p style=\"text-align:justify\">The dynamic mechanistic model breaks the permeation process down into steps, with overall permeation being determined by the kinetic rate constants linking each stage in the event. The dynamic model allows incorporation of concentration differences at each position and the surface area to volume ratios.<\/p>\r\n\r\n<p style=\"text-align:justify\">The method takes for input the free energy landscape calculated for the movement of each molecule across the membrane. It takes three rate constants, which are proportional to the &Delta;G<sub>flip<\/sub> and &Delta;G<sub>mem<\/sub> barriers encountered on the free energy landscape. In this model of permeation, movement between each position depends not only on the kinetic rate constants linking compartments but also the concentration of small molecule in each compartment.<\/p>\r\n","categories":[{"id":14,"title":"Hybrid","breadcrumb":[{"id":6,"title":"Simulated"},{"id":14,"title":"Hybrid"}]}],"url":"https:\/\/molmedb.upol.cz\/api\/v1\/methods\/37","landing_page":"https:\/\/molmedb.upol.cz\/method\/37","created_at":"2018-11-14T09:29:30.000000Z","updated_at":"2019-07-19T07:16:10.000000Z"}}